Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs8141797 | chr22:24582041 | C/T | 3.12E-5 | 412 | 10.02 | 16.23 | 16.35 | KM Plot |
| HNSC | rs835997 | chr11:44925939 | A/G | 1.67E-12 | 412 | 2.92 | 15.78 | 16.92 | KM Plot |
| HNSC | rs913192 | chr10:134544899 | A/G | 0 | 412 | 2.07 | 14.58 | 17.33 | KM Plot |
| HNSC | rs916440 | chr22:42367837 | C/T | 3.72E-6 | 412 | 7.17 | 17.07 | 16.3 | KM Plot |
| HNSC | rs9293932 | chr6:74343128 | C/T | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs9293933 | chr6:74343319 | G/T | 3.0E-5 | 411 | 17.13 | 13.12 | 12.73 | KM Plot |
| HNSC | rs9303666 | chr17:25945108 | C/T | 3.39E-5 | 412 | 13.5 | 16.35 | 17.08 | KM Plot |
| HNSC | rs9318578 | chr13:79261885 | A/G | 5.79E-7 | 412 | 1.58 | 16.23 | 16.43 | KM Plot |
| HNSC | rs9319924 | chr18:55687065 | A/G | 4.35E-8 | 412 | 3 | 15.12 | 16.97 | KM Plot |
| HNSC | rs9383053 | chr6:15395222 | A/G | 3.62E-8 | 412 | 3 | 15.35 | 16.5 | KM Plot |
| HNSC | rs9397451 | chr6:150244261 | C/A | 3.15E-5 | 403 | 16.5 | 18.02 | 12.6 | KM Plot |
| HNSC | rs9430105 | chr1:213067537 | C/G | 1.43E-5 | 409 | 16.17 | 20.2 | 5.03 | KM Plot |
| HNSC | rs9442940 | chr6:74369251 | A/C | 6.8E-5 | 408 | 6.47 | 13.1 | 17.12 | KM Plot |
| HNSC | rs9446957 | chr6:74342244 | T/C | 5.81E-5 | 411 | 17.13 | 13.12 | 10.3 | KM Plot |
| HNSC | rs9446958 | chr6:74342284 | G/A | 5.81E-5 | 411 | 17.13 | 13.12 | 10.3 | KM Plot |